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RNA sequencing of sarcomas with simple karyotypes: identification and enrichment of fusion transcripts.
Gene fusions are neoplasia-associated mutations arising from structural chromosomal rearrangements. They have a strong impact on tumor development and constitute important diagnostic markers. Malignant soft tissue tumors (sarcomas) constitute a heterogeneous group of neoplasms with >50 distinct subtypes, each of which is rare. In addition, there is considerable morphologic overlap between sarcomas
Cell polarity and the control of apical growth in Streptomyces.
Streptomyces cells grow by building cell wall at one pole-the hyphal tip. Although analogous to hyphal growth in fungi, this is achieved in a prokaryote, without any of the well-known eukaryotic cell polarity proteins, and it is also unique among bacterial cases of cell polarity. Further, polar growth of Streptomyces and the related mycobacteria and corynebacteria is independent of the MreB cytosk
Tetraisopropyldisiloxane-1,3-diyl as a versatile protecting group for pentopyranosides.
The protecting group tetraisopropyldisiloxane-1,3-yl has been investigated for simultaneous protection of two hydroxyls on pentopyranosides. Methyl α-d-xylopyranoside is protected in excellent regioselectivity and high yield to form the 2,3-protected xylopyranoside whereas methyl β-d-xylopyranoside gives the 3,4-protected product also with excellent regioselectivity.
Negative-ion/positive-ion coincidence spectroscopy with a novel spectrometer
VRRW on complete-like graphs: almost sure behavior
By a theorem of Volkov [12] we know that on most graphs with positive probability the linearly vertex-reinforced random walk (VRRW) stays within a finite “trapping” subgraph at all large times. The question of whether this tail behavior occurs with probability one is open in general. In his thesis, Pemantle [5] proved, via a dynamical system approach, that for a VRRW on any complete graph the asym
Stem Cells as In Vitro Models of Disease
Glucocorticoids induce the production of the chemoattractant CCL20 in airway epithelium.
Global Governance, Legitimacy and (De)Legitimation
The criminal patient?: A systematic review on patients' involvement in the human organ trade
A Fast Output-Sensitive Algorithm for Boolean Matrix Multiplication
We use randomness to exploit the potential sparsity of the Boolean matrix product in order to speed up the computation of the product. Our new fast outputsensitive algorithm for Boolean matrix product and its witnesses is randomized and provides the Boolean product and its witnesses almost certainly. Its worst-case time performance is expressed in terms of the input size and the number of non-zero
Characteristics of third-generation glucose biosensors based on Corynascus thermophilus cellobiose dehydrogenase immobilized on commercially available screen-printed electrodes working under physiological conditions.
In this article, we describe a third-generation amperometric glucose biosensor working under physiological conditions. This glucose biosensor consists of a recently discovered cellobiose dehydrogenase from the ascomycete Corynascus thermophilus (CtCDH) immobilized on different commercially available screen-printed electrodes made of carbon (SPCEs), carboxyl-functionalized single-walled carbon nano
Latent heat exchange in the boreal and arctic biomes
In this study latent heat flux (E) measurements made at 65 boreal and arctic eddy-covariance (EC) sites were analyses by using the Penman-Monteith equation. Sites were stratified into nine different ecosystem types: harvested and burnt forest areas, pine forests, spruce or fir forests, Douglas-fir forests, broadleaf deciduous forests, larch forests, wetlands, tundra and natural grasslands. The Pen
Dressed counterions: Polyvalent and monovalent ions at charged dielectric interfaces
We investigate the ion distribution and overcharging at charged interfaces with dielectric inhomogeneities in the presence of asymmetric electrolytes containing polyvalent and monovalent ions. We formulate an effective "dressed counterion" approach by integrating out the monovalent salt degrees of freedom and show that it agrees with results of explicit Monte Carlo simulations. We then apply the d
DNA Glycosylases Involved in Base Excision Repair May Be Associated with Cancer Risk in BRCA1 and BRCA2 Mutation Carriers.
Single Nucleotide Polymorphisms (SNPs) in genes involved in the DNA Base Excision Repair (BER) pathway could be associated with cancer risk in carriers of mutations in the high-penetrance susceptibility genes BRCA1 and BRCA2, given the relation of synthetic lethality that exists between one of the components of the BER pathway, PARP1 (poly ADP ribose polymerase), and both BRCA1 and BRCA2. In the p
Mapping the New Molecular Landscape: Social Dimensions of Epigenetics
Epigenetics is the study of changes in gene expression caused by mechanisms other than changes in the DNA itself. The field is rapidly growing and being widely promoted, attracting attention in diverse arenas. These include those of the social sciences, where some researchers have been encouraged by the resonance between imaginaries of development within epigenetics and social theory. Yet, sustain
Pinpointing oxidative modifications in proteins-recent advances in analytical methods
Oxidation is one of the key degradation pathways in proteins and is of relevance to analyze in a wide variety of research disciplines. The types of different modifications occurring during oxidation by reactive oxygen species (ROS) are almost as many as the number of available analytical methods. Protein oxidation in biological samples has traditionally been analyzed by various protein carbonyl as
Suppressor of cytokine signaling 2 (SOCS2) associates with FLT3 and negatively regulates downstream signaling.
The suppressor of cytokine signaling 2 (SOCS2) is a member of the SOCS family of E3 ubiquitin ligases. SOCS2 is known to regulate signal transduction by cytokine receptors and receptor tyrosine kinases. The receptor tyrosine kinase FLT3 is of importance for proliferation, survival and differentiation of hematopoietic cells and is frequently mutated in acute myeloid leukemia. We observed that SOCS2
Special Issue on Future Wireless and Mobile Communication Preface
TFEB: Pathogenic role and therapeutic target in Parkinson disease.
Parkinson disease (PD) is characterized by the progressive loss of nigral dopamine neurons and the presence of accumulations containing the disease-causing protein SNCA/α-synuclein. Here we review our recent findings describing how SNCA impairs the function of the master regulator of the autophagy-lysosomal pathway (ALP), the transcription factor EB (TFEB), and that genetic or pharmacological stim
