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Our bioinformatics services include below analysis pipeline, deliverables and data management. Other pipelines can be discussed. Seq-Only Analysis pipelineDemultiplexing, involves in re-organizing the FASTQ files based on the sample index information, and generating the statistics and reporting files. This task will be performed using the bcl2fastq2 software with default settings.DeliverablesProje

https://www.ctg.lu.se/genomic-services/sequencing-only/bioinformatics-and-deliverables - 2025-12-15

DNA ExtractionWe recommend Qiagen spin column-based nucleic acids purification methods. Concentration and PurityUse spectrophotometrical method to get the concentration and a ratio (OD260/280 and OD260/230) of each sample.DNA should have an OD260/280 ratio ~1.8 and OD260/230 ratio in range 1.8-2.2 (the ratio shows purity of samples).DNA amount recommendedMethylation: Bisulfitconversion: 555 ng DNA

https://www.ctg.lu.se/genomic-services/array/sample-requirement - 2025-12-15

Our bioinformatics services include below analysis, deliverables and data management. AnalysisQC and bioinformatics analysis is done in Illuminas Genome Studio software.DeliverablesExcel file summarizing information about the experimental setup and methods (MIAME.xls)5 folder:DecodeData – files used during scanning.GenomeStudio – executable file (.bsc) for the created GenomStudio project.ImageData

https://www.ctg.lu.se/genomic-services/array/bioinformatics-and-deliverables - 2025-12-15

This service is only for future sequencing projects at CTG. Requesting a project at CTGTo initiate a project using our available services, please start a project in iLab. You can login using your LucatID (SWAMID) on the Lund University iLab webpage.  RNA RNA concentration RNA Concentration is measured by a fluorometric method, using the Qubit 4 or Qubit Flex instruments. Available Assays: Broad Ra

https://www.ctg.lu.se/services/quality-control - 2025-12-15

Service projects are registered and processed in iLab, an online project managing software for core facilities. It provides transparency of projects and quotes. It also includes a booking schedule for some equipment. What is iLab?iLab is our core facility's online platform for managing sequencing service orders. Through iLab, you can:Request project consultationsGet price quotesInitiate library pr

https://www.ctg.lu.se/how-start-project - 2025-12-15

CTG has a wide range of services which include laboratory analysis and bioinformatics pipelines. We also offer advice on how to design your research project to allow for reliable results. Genomics Single Cell Transcriptomics Spatial Sequencing Quality Control

https://www.ctg.lu.se/services - 2025-12-15

Special Offers for New Users! Trying Parse Evercode for the first time? Enjoy up to 45% off your first run:Mini: 45% off, WT: 18% off, Mega 96: 8% off, Mega 384: 5% off Since 2019, CTG has offered a broad range of single-cell applications, providing expert knowledge, accessibility, and personalized support. We continuously update our methods and instruments in collaboration with local researchers,

https://www.ctg.lu.se/services/single-cell - 2025-12-15

The Universal kits (formerly Next GEM Gene Expression) offer scalable whole transcriptome profiling at the single-cell level, with flexible sample input options. The 3' assay can be paired with cell surface protein staining, while the 5' assay supports full-length TCR/BCR sequencing, antigen specificity, CRISPR guide analysis, and cell surface protein profiling. For cost efficiency, samples can be

https://www.ctg.lu.se/services/single-cell/universal-3-or-5-gene-expression - 2025-12-15

Flex Gene Expression by 10x Genomics enables high-sensitivity single-cell profiling while preserving sample biology through fixation at collection. This approach stabilizes RNA, allowing flexible handling and batching without compromising data quality. As the most sensitive 10x Genomics application, it supports built-in sample multiplexing, processing up to 16 samples in a single GEM reaction. It

https://www.ctg.lu.se/services/single-cell/flex-gene-expression - 2025-12-15

The cost for a project varies according to the application and the number of samples. Please contact CTG for the specific pricing for your project. Pricing information can be found at your iLAB account. Contact InformationE-Mailctg_service [at] med [dot] lu [dot] sesinglecell [dot] ctgservice [at] med [dot] lu [dot] sePhone+46 73 075 3563+46 73 096 8048AddressBMC - Biomedical Centre D14Klinikgatan

https://www.ctg.lu.se/prices - 2025-12-15

Single-cell genomics now available for all users at Lund UniversitySince March 2019 CTG offers a dynamic, state-of-the-art platform for single-cell sequencing to users at Lund University. Here we will introduce the technologies available, the service provided, and how to start a project Introduction to the facilitySeptember 10, 2019 at 9.00 – 10:15Belfrage Lecture hall, BMC D15SpeakersMarkus Heide

https://www.ctg.lu.se/events - 2025-12-15

Contact InformationE-Mailctg_service [at] med [dot] lu [dot] sesinglecell [dot] ctgservice [at] med [dot] lu [dot] sePhone+46 73 075 3563+46 73 096 8048AddressBMC - Biomedical Centre D14Klinikgatan 32221 85 Lund

https://www.ctg.lu.se/publications/pre-prints - 2025-12-15

All customers using services at Center for Translational Genomics (CTG) should cite CTG by including the following sentence in the acknowledgments:"The authors would like to acknowledge Clinical Genomics Lund, SciLifeLab and Center for Translational Genomics (CTG), Lund University, for providing expertise and service with sequencing and analysis."  2025 Evaluating cell-specific gene expression usi

https://www.ctg.lu.se/publications - 2025-12-15

CTG offers Sequencing-Only services for user-prepared libraries on the NovaSeq X Plus and NextSeq 2000 platforms. This service is designed for users who prepare their own sequencing-ready libraries and only require access to our Illumina instruments.What’s Included✔ Use of the selected Illumina sequencer✔ Required sequencing reagents✔ Instrument handling by CTG staff✔ Storage of data for 1 month a

https://www.ctg.lu.se/services/sequencing - 2025-12-15

Since 2019 CTG offers a dynamic, state-of-the-art platform for single-cell sequencing to users at Lund University with the aim to provide expertise, accessibility, proximity and service to researchers in need for single-cell genomics. General guidelines   Gentle sample isolation is essential not to bias against vulnerable cell types while fast isolation is desirable to reduce degradation of nuclei

https://www.ctg.lu.se/test-page-single-cell-genomics-platform - 2025-12-15

We offer comprehensive RNA sequencing services, including total RNA, mRNA, and small RNA library preparation and sequencing on Illumina platforms. Our services are tailored to meet the specific needs of each project, and we also provide consultation services for protocol development and collaborative research. Consultation Services:We offer consultations for project guidance and collaboration on p

https://www.ctg.lu.se/services/transcriptomics - 2025-12-15

Wireless networkLund University’s wireless network is called Eduroam. Students from other universities that have Eduroam can log in when they are on the Lund University campus. Similarly, Lund University students can connect using an Eduroam network at other universities.How to connect to Eduroam (Lund University's central website)Student accountAs a student at Lund University, you are given a stu

https://www.student.med.lu.se/en/study-areas-and-it/student-account-and-wireless-network - 2025-12-15

Quality & Progress System for students at the Faculty of Medicine     This page has moved. See the new website at: https://www.qps.education.lu.se

https://www.student.med.lu.se/en/qps - 2025-12-15

The Academic Support CentreThe Academic Support Centre is there to help you if, for example, you want to improve your study technique, enhance your public speaking skills or become better at writing academic texts.More about the Academic Support Centre (Lund University's central website)Learning support and disabilitiesIf you have a disability, for example dyslexia, a visual impairment or ADHD, we

https://www.student.med.lu.se/en/support-and-tools/resources-and-support-students - 2025-12-15

I learned a lot about how it is to work in a lab in Canada, and of course I got to perform experiments for my own projects as well.Exchange student at University of British Columbia (UBC)  When can I study abroad?Semester 4-5You can study courses abroad during semesters 4 and 5. Theoretical courses can be exchanged provided that these can be matched with similar courses at partner universities. Mo

https://www.student.med.lu.se/en/study-abroad-0/study-abroad-opportunities/bachelors-programme-biomedicine - 2025-12-15